Institute of Population Genetics PoPoolation DB Institute of Population Genetics University of Veterinary Medicine Vienna
 
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Query by region Query by Gene Query by Fasta sequence Query by Gene GTF
Enter Chromosome region
  
Chromosome : 
Start : 
End : 
* max 100 KB region. 
Enter Gene symbol OR Gene name
  
Enter search term : 
* Only 1 gene allowed
Copy paste or upload Fasta sequence
Paste fasta sequence: 
* max 100 KB sequence AND max 1 sequence
* First line must be FASTA header starting with > symbol
Example: >seq1
OR upload fasta file : 
* max 100 KB sequence AND max 1 sequence
* First line must be FASTA header starting with > symbol
Example: >seq1
Upload GTF file
Upload GTF file : 
* max 100 KB region AND max 1 entry.
Select population ID : 
 
Select reference genome : 
D. melanogaster (5.18)
 
Retrieve:
 Pi
 Theta
 D
 Only Polymorphism
Enter flanking regions
5 prime : 
3 prime : 
Advanced parameters
Minimum count : 
Minimum quality score : 
Minimum coverage : 
Maximum coverage : 
Minimum covered fraction : 
 
 
Window size : 
Step size : 
 
 
      
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