Browse data
D. mauritiana
D. melanogaster
D. mauritiana
D. simulans
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Select input option
Query by region
Query by Gene
Query by Fasta sequence
Query by Gene GTF
Enter Chromosome region
Chromosome :
2L
2R
3L
3R
X
4
U
2LHet
2RHet
3LHet
3RHet
XHet
YHet
dmel_mitochondrion_genome
Start :
End :
* max 100 KB region.
Enter Gene symbol OR Gene name
Enter search term :
* Only 1 gene allowed
Copy paste or upload Fasta sequence
sample input
Paste fasta sequence:
* max 100 KB sequence AND max 1 sequence
* First line must be FASTA header starting with > symbol
Example: >seq1
OR upload fasta file :
* max 100 KB sequence AND max 1 sequence
* First line must be FASTA header starting with > symbol
Example: >seq1
Upload GTF file
sample input
Upload GTF file :
* max 100 KB region AND max 1 entry.
Select population ID :
Dmel_Portugal_all
Select reference genome :
D. melanogaster (5.18)
Retrieve:
Pi
Theta
D
Only Polymorphism
Enter flanking regions
5 prime :
3 prime :
Advanced parameters
Minimum count :
Minimum quality score :
Minimum coverage :
Maximum coverage :
Minimum covered fraction :
Window size :
Step size :
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